Keeping the Internet fast and secure: introducing Merkle Tree Certificates

Cloudflare is launching an experiment with Chrome to evaluate fast, scalable, and quantum-ready Merkle Tree Certificates, all without degrading performance or changing WebPKI trust relationships.

Keeping the Internet fast and secure: introducing Merkle Tree Certificates

2025-10-28

Luke Valenta

Christopher Patton

Vânia Gonçalves

Bas Westerbaan

12 min read

This post is also available in 日本語 and 한국어.

The world is in a race to build its first quantum computer capable of solving practical problems not feasible on even the largest conventional supercomputers. While the quantum computing paradigm promises many benefits, it also threatens the security of the Internet by breaking much of the cryptography we have come to rely on.

To mitigate this threat, Cloudflare is helping to migrate the Internet to Post-Quantum (PQ) cryptography. Today, about 50% of traffic to Cloudflare's edge network is protected against the most urgent threat: an attacker who can intercept and store encrypted traffic today and then decrypt it in the future with the help of a quantum computer. This is referred to as the harvest now, decrypt later threat.

However, this is just one of the threats we need to address. A quantum computer can also be used to crack a server's TLS certificate, allowing an attacker to impersonate the server to unsuspecting clients. The good news is that we already have PQ algorithms we can use for quantum-safe authentication. The bad news is that adoption of these algorithms in TLS will require significant changes to one of the most complex and security-critical systems on the Internet: the Web Public-Key Infrastructure (WebPKI).

The central problem is the sheer size of these new algorithms: signatures for ML-DSA-44, one of the most performant PQ algorithms standardized by NIST, are 2,420 bytes long, compared to just 64 bytes for ECDSA-P256, the most popular non-PQ signature in use today; and its public keys are 1,312 bytes long, compared to just 64 bytes for ECDSA. That's a roughly 20-fold increase in size. Worse yet, the average TLS handshake includes a number of public keys and signatures, adding up to 10s of kilobytes of overhead per handshake. This is enough to have a noticeable impact on the performance of TLS.

That makes drop-in PQ certificates a tough sell to enable today: they don’t bring any security benefit before Q-day — the day a cryptographically relevant quantum computer arrives — but they do degrade performance. We could sit and wait until Q-day is a year away, but that’s playing with fire. Migrations always take longer than expected, and by waiting we risk the security and privacy of the Internet, which is dear to us.

It's clear that we must find a way to make post-quantum certificates cheap enough to deploy today by default for everyone — not just those that can afford it. In this post, we'll introduce you to the plan we’ve brought together with industry partners to the IETF to redesign the WebPKI in order to allow a smooth transition to PQ authentication with no performance impact (and perhaps a performance improvement!). We'll provide an overview of one concrete proposal, called Merkle Tree Certificates (MTCs), whose goal is to whittle down the number of public keys and signatures in the TLS handshake to the bare minimum required.

But talk is cheap. We know from experience that, as with any change to the Internet, it's crucial to test early and often. Today we're announcing our intent to deploy MTCs on an experimental basis in collaboration with Chrome Security. In this post, we'll describe the scope of this experiment, what we hope to learn from it, and how we'll make sure it's done safely.

The WebPKI today — an old system with many patches

Why does the TLS handshake have so many public keys and signatures?

Let's start with Cryptography 101. When your browser connects to a website, it asks the server to authenticate itself to make sure it's talking to the real server and not an impersonator. This is usually achieved with a cryptographic primitive known as a digital signature scheme (e.g., ECDSA or ML-DSA). In TLS, the server signs the messages exchanged between the client and server using its secret key, and the client verifies the signature using the server's public key. In this way, the server confirms to the client that they've had the same conversation, since only the server could have produced a valid signature.

If the client already knows the server's public key, then only 1 signature is required to authenticate the server. In practice, however, this is not really an option. The web today is made up of around a billion TLS servers, so it would be unrealistic to provision every client with the public key of every server. What's more, the set of public keys will change over time as new servers come online and existing ones rotate their keys, so we would need some way of pushing these changes to clients.

This scaling problem is at the heart of the design of all PKIs.

Trust is transitive

Instead of expecting the client to know the server's public key in advance, the server might just send its public key during the TLS handshake. But how does the client know that the public key actually belongs to the server? This is the job of a certificate.

A certificate binds a public key to the identity of the server — usually its DNS name, e.g., cloudflareresearch.com. The certificate is signed by a Certification Authority (CA) whose public key is known to the client. In addition to verifying the server's handshake signature, the client verifies the signature of this certificate. This establishes a chain of trust: by accepting the certificate, the client is trusting that the CA verified that the public key actually belongs to the server with that identity.

Clients are typically configured to trust many CAs and must be provisioned with a public key for each. Things are much easier however, since there are only 100s of CAs instead of billions. In addition, new certificates can be created without having to update clients.

These efficiencies come at a relatively low cost: for those counting at home, that's +1 signature and +1 public key, for a total of 2 signatures and 1 public key per TLS handshake.

That's not the end of the story, however. As the WebPKI has evolved, so have these chains of trust grown a bit longer. These days it's common for a chain to consist of two or more certificates rather than just one. This is because CAs sometimes need to rotate their keys, just as servers do. But before they can start using the new key, they must distribute the corresponding public key to clients. This takes time, since it requires billions of clients to update their trust stores. To bridge the gap, the CA will sometimes use the old key to issue a certificate for the new one and append this certificate to the end of the chain.

That's +1 signature and +1 public key, which brings us to 3 signatures and 2 public keys. And we still have a little ways to go.

Trust but verify

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